Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56267636..56269580-chr6:56284501..56287415,2	K562	blood:
2	chr6:56268256..56270109-chr6:56270332..56272934,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:12)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1022577	chr6:56263674-56289698	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56253000-56282600	Weak transcription	Aorta	Aorta
2	chr6:56264400-56268600	Weak transcription	Small Intestine	intestine
3	chr6:56265200-56268600	Weak transcription	Hela-S3	cervix
4	chr6:56265200-56270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:56265200-56270200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:56265200-56271200	Weak transcription	Stomach Mucosa	stomach
7	chr6:56265400-56270000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:56265400-56270000	Weak transcription	Gastric	stomach
9	chr6:56265600-56268600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:56265600-56269200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:56267200-56271800	Enhancers	HepG2	liver
12	chr6:56267800-56270000	Enhancers	Colon Smooth Muscle	Colon
13	chr6:56268000-56270400	Enhancers	Rectal Smooth Muscle	rectum
14	chr6:56268200-56268800	Enhancers	Stomach Smooth Muscle	stomach
15	chr6:56268200-56270000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:56268400-56269000	Enhancers	Fetal Heart	heart
17	chr6:56268400-56269200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:56268400-56269600	Enhancers	HSMMtube	muscle
19	chr6:56268400-56269800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr6:56268400-56270000	Enhancers	Fetal Lung	lung
21	chr6:56268400-56270400	Enhancers	Liver	Liver
22	chr6:56268400-56270400	Enhancers	Fetal Stomach	stomach
23	chr6:56268400-56271400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search: