Variant report
| Variant | rs6765125 |
|---|---|
| Chromosome Location | chr3:98079959-98079960 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11717178 | 0.86[ASN][1000 genomes] |
| rs1603602 | 0.86[ASN][1000 genomes] |
| rs1603603 | 0.86[ASN][1000 genomes] |
| rs34532306 | 0.84[ASN][1000 genomes] |
| rs34541751 | 0.86[ASN][1000 genomes] |
| rs34690476 | 0.86[ASN][1000 genomes] |
| rs34931219 | 0.86[ASN][1000 genomes] |
| rs35288084 | 0.86[ASN][1000 genomes] |
| rs35315439 | 0.84[ASN][1000 genomes] |
| rs35831406 | 0.86[ASN][1000 genomes] |
| rs58332056 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62268863 | 0.86[ASN][1000 genomes] |
| rs62268864 | 0.86[ASN][1000 genomes] |
| rs6764487 | 0.86[ASN][1000 genomes] |
| rs6772436 | 0.86[ASN][1000 genomes] |
| rs6775143 | 0.86[ASN][1000 genomes] |
| rs6809869 | 0.86[ASN][1000 genomes] |
| rs6810110 | 0.80[ASN][1000 genomes] |
| rs6810193 | 0.86[ASN][1000 genomes] |
| rs7609934 | 0.86[ASN][1000 genomes] |
| rs7610289 | 0.86[ASN][1000 genomes] |
| rs7610802 | 0.86[ASN][1000 genomes] |
| rs7621918 | 0.86[ASN][1000 genomes] |
| rs7642283 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7643309 | 0.86[ASN][1000 genomes] |
| rs9814187 | 0.86[ASN][1000 genomes] |
| rs9821488 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9822335 | 0.86[ASN][1000 genomes] |
| rs9823733 | 0.86[ASN][1000 genomes] |
| rs9829822 | 0.86[ASN][1000 genomes] |
| rs9829977 | 0.85[ASN][1000 genomes] |
| rs9831068 | 0.86[ASN][1000 genomes] |
| rs9833818 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1004820 | chr3:97852875-98169488 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1000834 | chr3:97859880-98095473 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv1009918 | chr3:97946030-98155450 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:98078800-98080400 | Enhancers | Esophagus | oesophagus |
| 2 | chr3:98079600-98080800 | Enhancers | GM12878-XiMat | blood |
| 3 | chr3:98079800-98081600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
