Variant report

Variant	rs6765816
Chromosome Location	chr3:179994719-179994720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10513775	0.81[AFR][1000 genomes]
rs13327114	0.90[AFR][1000 genomes]
rs1543266	0.88[AFR][1000 genomes]
rs16831253	1.00[AMR][1000 genomes]
rs16831270	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1965540	0.84[AFR][1000 genomes]
rs2090762	0.95[YRI][hapmap]
rs2091272	0.81[YRI][hapmap]
rs28373443	0.86[AFR][1000 genomes]
rs28545820	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28701054	1.00[AMR][1000 genomes]
rs2879655	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57727445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60008753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765080	0.85[AFR][1000 genomes]
rs6765906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776289	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6779403	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6804532	0.94[AFR][1000 genomes]
rs6809894	0.93[AFR][1000 genomes]
rs73885453	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73885465	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73885473	0.94[AFR][1000 genomes]
rs7614651	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628443	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7635460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9815044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9819315	1.00[AMR][1000 genomes]
rs9825264	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9826576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9827331	1.00[AMR][1000 genomes]
rs9830454	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9832076	0.94[AFR][1000 genomes]
rs9836941	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9841642	0.94[AFR][1000 genomes]
rs9842405	0.90[AFR][1000 genomes]
rs9849568	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855796	0.81[AFR][1000 genomes]
rs9863397	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873559	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878041	chr3:179983857-180097855	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179985200-179994800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:179992600-179995600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:179992800-179994800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:179993000-179998600	Weak transcription	NHDF-Ad	bronchial
5	chr3:179993000-180002000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:179993600-179994800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:179993600-179996200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:179993600-179998400	Weak transcription	HMEC	breast
9	chr3:179994200-179998600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:179994200-179999000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:179994400-179995200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:179994600-179995400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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