Variant report

Variant	rs6767176
Chromosome Location	chr3:139832639-139832640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12107122	1.00[EUR][1000 genomes]
rs12108195	1.00[EUR][1000 genomes]
rs1426057	1.00[EUR][1000 genomes]
rs1426059	1.00[EUR][1000 genomes]
rs16849976	1.00[MEX][hapmap]
rs1834498	1.00[GIH][hapmap]
rs1834502	1.00[GIH][hapmap]
rs2280336	0.86[CHB][hapmap]
rs28483038	1.00[EUR][1000 genomes]
rs2882425	0.81[ASW][hapmap];0.86[CHB][hapmap]
rs4600787	0.86[CHB][hapmap]
rs56686697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56821056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57350681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795400	1.00[MEX][hapmap]
rs72984115	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72984126	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72984155	1.00[ASN][1000 genomes]
rs72984159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72984179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619286	0.82[CHB][hapmap]
rs7624316	0.86[CHB][hapmap]
rs7640112	1.00[MEX][hapmap]
rs7643229	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829738	chr3:139670836-139851945	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139822400-139834600	Weak transcription	HSMMtube	muscle
2	chr3:139828400-139835600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:139830200-139847400	Weak transcription	Right Atrium	heart
4	chr3:139831400-139837400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:139831800-139832800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:139832400-139833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:139832600-139834400	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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