Variant report

Variant	rs67676263
Chromosome Location	chr5:80475534-80475535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80475399..80478769-chr5:80481164..80483786,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12659839	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1025799	chr5:80436584-80485252	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80448600-80475800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:80449800-80475800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:80452000-80481200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:80455400-80475800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:80457400-80476200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:80460200-80475600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr5:80461200-80484000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:80461800-80476200	Weak transcription	Brain Substantia Nigra	brain
9	chr5:80463200-80483600	Weak transcription	Brain Hippocampus Middle	brain
10	chr5:80463200-80490800	Weak transcription	Brain Angular Gyrus	brain
11	chr5:80463400-80483600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:80463600-80476600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:80464200-80528400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:80465200-80528200	Weak transcription	Ovary	ovary
15	chr5:80465600-80483800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:80465800-80478000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr5:80466000-80512600	Weak transcription	Gastric	stomach
18	chr5:80466200-80475600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:80466200-80475600	Weak transcription	HepG2	liver
20	chr5:80466200-80476600	Weak transcription	Adipose Nuclei	Adipose
21	chr5:80466200-80477800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:80466200-80483400	Weak transcription	Left Ventricle	heart
23	chr5:80466600-80490800	Weak transcription	Right Ventricle	heart
24	chr5:80468800-80483800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr5:80471400-80475800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:80472000-80476600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:80473000-80475800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:80474000-80479000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr5:80474800-80475800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr5:80474800-80487000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr5:80475000-80484600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr5:80475000-80485200	Strong transcription	Primary T cells from cord blood	blood
33	chr5:80475200-80490600	Weak transcription	Brain Anterior Caudate	brain
34	chr5:80475400-80480400	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:80475400-80481000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr5:80475400-80481400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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