Variant report

Variant	rs6767674
Chromosome Location	chr3:146399200-146399201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10935639	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11709433	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11709435	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11713544	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11718101	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1511567	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1877259	0.84[AFR][1000 genomes]
rs6804783	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7632865	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv4047	chr3:146368154-146401858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3369526	chr3:146374303-146400737	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146397600-146399200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:146398400-146404200	Enhancers	Dnd41	blood
3	chr3:146399200-146399600	Enhancers	Fetal Heart	heart
4	chr3:146399200-146401000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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