Variant report

Variant	rs6768181
Chromosome Location	chr3:143252118-143252119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12494880	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13060139	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16853772	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143223000-143256200	Weak transcription	Esophagus	oesophagus
2	chr3:143239200-143255200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:143245200-143254800	Weak transcription	NHLF	lung
4	chr3:143245200-143255600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:143245400-143255600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:143245600-143255000	Weak transcription	NHDF-Ad	bronchial
7	chr3:143245600-143255800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:143245800-143254600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:143246800-143255400	Weak transcription	HSMM	muscle
10	chr3:143248000-143255600	Weak transcription	Brain Substantia Nigra	brain
11	chr3:143248200-143255800	Weak transcription	Aorta	Aorta
12	chr3:143248400-143255000	Weak transcription	Fetal Stomach	stomach
13	chr3:143248400-143261000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:143248400-143263800	Weak transcription	Primary T cells from cord blood	blood
15	chr3:143248400-143276800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:143248600-143255000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:143249000-143255000	Weak transcription	Ovary	ovary
18	chr3:143249000-143255200	Weak transcription	HSMMtube	muscle
19	chr3:143249000-143256200	Weak transcription	Lung	lung
20	chr3:143250200-143252200	Enhancers	Fetal Lung	lung
21	chr3:143250200-143254400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:143250200-143269600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:143250800-143254800	Weak transcription	Dnd41	blood
24	chr3:143251200-143255000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr3:143251400-143254600	Weak transcription	Primary B cells from cord blood	blood
26	chr3:143251600-143252200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:143251800-143252400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:143252000-143252200	Enhancers	Fetal Muscle Trunk	muscle
29	chr3:143252000-143252200	Enhancers	Placenta	Placenta

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