Variant report

Variant	rs6768707
Chromosome Location	chr3:51727341-51727342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12488178	1.00[MEX][hapmap]
rs35374784	1.00[MEX][hapmap]
rs56865301	0.80[AFR][1000 genomes]
rs58638756	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv1814919	chr3:51703488-51752684	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv590278	chr3:51724147-51736744	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv590279	chr3:51724147-51737852	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51706400-51733400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:51706400-51741000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:51706600-51739600	Weak transcription	Small Intestine	intestine
4	chr3:51707800-51740400	Strong transcription	Fetal Intestine Small	intestine
5	chr3:51708800-51738800	Strong transcription	Fetal Intestine Large	intestine
6	chr3:51716200-51737000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:51716400-51741200	Weak transcription	Fetal Kidney	kidney
8	chr3:51716800-51738800	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:51717000-51727400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:51717400-51739800	Strong transcription	Liver	Liver
11	chr3:51719600-51741200	Weak transcription	NHDF-Ad	bronchial
12	chr3:51719800-51732400	Weak transcription	Hela-S3	cervix
13	chr3:51720000-51733200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:51720200-51733000	Weak transcription	Fetal Lung	lung
15	chr3:51720600-51739800	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr3:51720600-51740000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:51721000-51735600	Weak transcription	K562	blood
18	chr3:51721000-51738200	Weak transcription	A549	lung
19	chr3:51721000-51741000	Weak transcription	HUVEC	blood vessel
20	chr3:51721400-51734200	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr3:51721400-51738800	Strong transcription	Colonic Mucosa	Colon
22	chr3:51721400-51739400	Strong transcription	Thymus	Thymus
23	chr3:51721400-51739800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr3:51721400-51740000	Strong transcription	Placenta	Placenta
25	chr3:51721400-51740200	Strong transcription	Esophagus	oesophagus
26	chr3:51721400-51740400	Strong transcription	Dnd41	blood
27	chr3:51721400-51740600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr3:51721400-51740800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr3:51721600-51727600	Strong transcription	Ovary	ovary
30	chr3:51721600-51739400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:51721600-51740400	Strong transcription	Fetal Stomach	stomach
32	chr3:51721600-51740800	Weak transcription	HSMM	muscle
33	chr3:51721800-51740200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr3:51722000-51729600	Strong transcription	Primary B cells from cord blood	blood
35	chr3:51722000-51732000	Weak transcription	Osteobl	bone
36	chr3:51722000-51733200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr3:51722000-51733200	Weak transcription	HSMMtube	muscle
38	chr3:51722000-51733600	Weak transcription	NH-A	brain
39	chr3:51722200-51736600	Weak transcription	HMEC	breast
40	chr3:51722200-51739200	Strong transcription	Fetal Muscle Leg	muscle
41	chr3:51722400-51727400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:51722400-51739000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr3:51722400-51740200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:51722600-51740000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr3:51722600-51741200	Weak transcription	Stomach Mucosa	stomach
46	chr3:51722800-51729400	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:51722800-51732200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:51723200-51738600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:51723600-51727600	Strong transcription	Aorta	Aorta
50	chr3:51723600-51731400	Genic enhancers	Spleen	Spleen

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