Variant report

Variant	rs6768791
Chromosome Location	chr3:42976797-42976798
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11129989	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12490902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12495968	0.87[ASW][hapmap];0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.97[EUR][1000 genomes]
rs17074946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074953	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62248964	0.81[EUR][1000 genomes]
rs62248965	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs865842	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42962400-42980400	Weak transcription	Placenta	Placenta
2	chr3:42974200-42977200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:42975800-42977800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:42975800-42978200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:42976000-42976800	Enhancers	Primary T cells from cord blood	blood
6	chr3:42976000-42978000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:42976000-42978000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr3:42976000-42978200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:42976200-42977200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:42976200-42977800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:42976200-42978000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:42976200-42978000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:42976400-42977800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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