Variant report

Variant	rs6768921
Chromosome Location	chr3:34147822-34147823
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11717726	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2878621	0.82[ASN][1000 genomes]
rs35423629	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36079712	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7616086	0.89[ASN][1000 genomes]
rs7639561	0.87[ASN][1000 genomes]
rs9311044	0.90[ASN][1000 genomes]
rs9637518	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6768921	ASPH	trans	parietal	SCAN
rs6768921	DLEC1	cis	cerebellum	SCAN
rs6768921	GOLGA4	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34144200-34148400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:34144200-34148400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:34147600-34148200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:34147600-34148400	Enhancers	GM12878-XiMat	blood
5	chr3:34147800-34151600	Enhancers	Thymus	Thymus
6	chr3:34147800-34152600	Enhancers	Fetal Thymus	thymus
7	chr3:34147800-34153000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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