Variant report

Variant	rs6769037
Chromosome Location	chr3:22495103-22495104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1376033	0.82[YRI][hapmap]
rs1450347	1.00[TSI][hapmap]
rs17011295	1.00[TSI][hapmap]
rs6777672	0.90[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap]
rs6779014	1.00[TSI][hapmap];0.83[YRI][hapmap]
rs7611770	1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7636983	1.00[EUR][1000 genomes]
rs982604	1.00[TSI][hapmap]
rs9835464	1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003211	chr3:22244883-22584229	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv536520	chr3:22244883-22584229	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428082	chr3:22397625-22539817	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834634	chr3:22420053-22574021	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876623	chr3:22473729-22571896	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22491400-22497000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:22493200-22497200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:22494800-22495200	Enhancers	Fetal Thymus	thymus
4	chr3:22494800-22496000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:22494800-22496000	Enhancers	Adipose Nuclei	Adipose
6	chr3:22495000-22495800	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:22495000-22495800	Enhancers	Thymus	Thymus
8	chr3:22495000-22497000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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