Variant report

Variant	rs6770021
Chromosome Location	chr3:139105006-139105007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6766875	1.00[YRI][hapmap]
rs7630604	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7643153	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647091	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949635	chr3:139091219-139367043	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139084800-139107800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:139088200-139106000	Weak transcription	Stomach Mucosa	stomach
3	chr3:139092200-139107000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:139092200-139107800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:139092400-139107800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:139093000-139106200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:139095000-139107000	Weak transcription	Esophagus	oesophagus
8	chr3:139095000-139107000	Weak transcription	Gastric	stomach
9	chr3:139095000-139107600	Weak transcription	Lung	lung
10	chr3:139095200-139106800	Weak transcription	Aorta	Aorta
11	chr3:139095200-139108000	Weak transcription	Spleen	Spleen
12	chr3:139095400-139106200	Weak transcription	Fetal Stomach	stomach
13	chr3:139095800-139107000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:139096200-139106000	Weak transcription	Fetal Brain Male	brain
15	chr3:139096600-139106200	Weak transcription	Small Intestine	intestine
16	chr3:139097000-139106800	Weak transcription	Right Ventricle	heart
17	chr3:139097000-139107000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:139097000-139107000	Weak transcription	Psoas Muscle	Psoas
19	chr3:139098000-139105600	Weak transcription	Ovary	ovary
20	chr3:139098000-139106200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:139098200-139107600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr3:139098600-139106400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:139099200-139106200	Weak transcription	Fetal Intestine Small	intestine
24	chr3:139099200-139107800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:139101000-139106200	Weak transcription	Fetal Heart	heart
26	chr3:139101000-139106200	Weak transcription	HMEC	breast
27	chr3:139101200-139106200	Weak transcription	Primary T cells from cord blood	blood
28	chr3:139101200-139106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:139101200-139106400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:139101400-139106200	Weak transcription	Left Ventricle	heart
31	chr3:139101400-139106400	Weak transcription	Thymus	Thymus
32	chr3:139101400-139106600	Weak transcription	Fetal Lung	lung
33	chr3:139101400-139107000	Weak transcription	Fetal Muscle Leg	muscle
34	chr3:139101600-139106000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr3:139101600-139106200	Weak transcription	Brain Angular Gyrus	brain
36	chr3:139101600-139106200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:139101600-139106200	Weak transcription	Fetal Intestine Large	intestine
38	chr3:139101600-139106200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:139101600-139106200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:139101600-139106200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr3:139101600-139106200	Weak transcription	K562	blood
42	chr3:139101600-139106200	Weak transcription	NHEK	skin
43	chr3:139101600-139106400	Weak transcription	HSMMtube	muscle
44	chr3:139101600-139107000	Weak transcription	Fetal Kidney	kidney
45	chr3:139101600-139107600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:139101800-139105600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr3:139101800-139106000	Weak transcription	Brain Germinal Matrix	brain
48	chr3:139101800-139106200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr3:139101800-139106200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:139101800-139106200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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