Variant report

Variant	rs6770031
Chromosome Location	chr3:112893640-112893641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10934225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124501	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1124502	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11916474	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11916561	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12632780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13320844	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6794073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6794383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7625299	0.90[AFR][1000 genomes]
rs9288974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9681927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9868047	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs993703	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517636	chr3:112878536-112893640	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
6	nsv877346	chr3:112893640-112938683	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112886400-112893800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:112886400-112893800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:112889000-112896600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:112889200-112893800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:112889200-112893800	Weak transcription	Fetal Stomach	stomach
6	chr3:112889200-112893800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:112889200-112898000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:112889400-112893800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:112889400-112894200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:112889400-112898200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:112892800-112893800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:112893000-112893800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:112893000-112894600	Enhancers	Colon Smooth Muscle	Colon
14	chr3:112893200-112894400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:112893200-112894600	Enhancers	Fetal Lung	lung
16	chr3:112893200-112894600	Enhancers	Ovary	ovary
17	chr3:112893200-112894600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr3:112893400-112894000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:112893400-112894400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:112893600-112894200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:112893600-112894600	Enhancers	Primary monocytes fromperipheralblood	blood

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