Variant report

Variant	rs6770037
Chromosome Location	chr3:133182417-133182418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133169398..133190840-chr3:133288286..133298861,41	MCF-7	breast:
2	chr3:133166486..133169051-chr3:133181517..133184490,2	MCF-7	breast:
3	chr3:133182317..133184120-chr3:133296724..133299109,2	MCF-7	breast:
4	chr3:133179819..133183044-chr3:133290517..133294355,4	MCF-7	breast:
5	chr3:133180327..133181853-chr3:133181928..133184881,2	MCF-7	breast:
6	chr3:133182278..133184590-chr3:133188280..133190685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170819	Chromatin interaction
ENSG00000091527	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1479179	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2859683	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs56841612	1.00[EUR][1000 genomes]
rs59636252	1.00[EUR][1000 genomes]
rs72980081	1.00[EUR][1000 genomes]
rs967651	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1829199	chr3:133158065-133213047	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877505	chr3:133167363-133235272	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv237800	chr3:133178030-133185521	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133161000-133191000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:133177200-133185800	Enhancers	Fetal Thymus	thymus
3	chr3:133178600-133185600	Weak transcription	Left Ventricle	heart
4	chr3:133178800-133186800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:133179000-133187000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:133179400-133185600	Enhancers	GM12878-XiMat	blood
7	chr3:133179600-133187400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:133180000-133183400	Weak transcription	Stomach Mucosa	stomach
9	chr3:133180000-133185600	Weak transcription	Right Atrium	heart
10	chr3:133180000-133187000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:133180000-133191000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:133180400-133185200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:133180400-133185400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:133180400-133185600	Weak transcription	Esophagus	oesophagus
15	chr3:133180600-133183400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:133180600-133185200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:133180600-133185600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:133180600-133185800	Weak transcription	HSMMtube	muscle
19	chr3:133181000-133183200	Enhancers	Thymus	Thymus
20	chr3:133181200-133183600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:133181400-133184400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:133181400-133191400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:133182000-133182600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:133182000-133183000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:133182000-133183000	Enhancers	Placenta	Placenta
26	chr3:133182000-133183200	Enhancers	Hela-S3	cervix
27	chr3:133182200-133182600	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr3:133182200-133182600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:133182200-133182600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:133182200-133182600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:133182200-133182600	Enhancers	Duodenum Mucosa	Duodenum
32	chr3:133182200-133182600	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr3:133182200-133182800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr3:133182200-133182800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr3:133182200-133182800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr3:133182200-133183000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr3:133182200-133183000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr3:133182200-133183000	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr3:133182200-133183000	Enhancers	Fetal Muscle Leg	muscle
40	chr3:133182200-133183000	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr3:133182200-133183000	Enhancers	Spleen	Spleen
42	chr3:133182200-133183000	Enhancers	NHEK	skin
43	chr3:133182200-133183200	Enhancers	Primary T cells from cord blood	blood
44	chr3:133182200-133187200	Enhancers	Primary B cells from cord blood	blood
45	chr3:133182200-133188800	Enhancers	Primary B cells from peripheral blood	blood
46	chr3:133182400-133182600	Enhancers	Fetal Kidney	kidney
47	chr3:133182400-133182600	Enhancers	HepG2	liver
48	chr3:133182400-133183000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:133182400-133183000	Enhancers	Colonic Mucosa	Colon
50	chr3:133182400-133183200	Enhancers	Small Intestine	intestine

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