Variant report

Variant	rs6770374
Chromosome Location	chr3:139047350-139047351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139046649..139048613-chr3:139049792..139051458,2	MCF-7	breast:
2	chr3:139007076..139010029-chr3:139046748..139049075,2	K562	blood:
3	chr3:139034063..139036703-chr3:139045251..139047827,2	K562	blood:
4	chr3:139038837..139041426-chr3:139046835..139048335,2	K562	blood:
5	chr3:139046461..139048787-chr3:139056957..139058941,2	K562	blood:
6	chr3:139045986..139048123-chr3:139057280..139059882,2	K562	blood:
7	chr3:139035203..139037991-chr3:139045251..139047764,2	K562	blood:
8	chr3:138660642..138664430-chr3:139046822..139050119,4	K562	blood:
9	chr3:139031351..139032995-chr3:139045490..139048189,2	MCF-7	breast:
10	chr3:138829485..138831006-chr3:139046744..139049335,2	K562	blood:
11	chr3:138831386..138833720-chr3:139046881..139049087,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11924964	0.91[EUR][1000 genomes]
rs11928018	0.85[EUR][1000 genomes]
rs12107249	0.91[EUR][1000 genomes]
rs2307030	0.88[EUR][1000 genomes]
rs56041176	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439849	0.95[ASN][1000 genomes]
rs6807527	0.95[ASN][1000 genomes]
rs6807695	0.90[ASN][1000 genomes]
rs72980994	0.95[ASN][1000 genomes]
rs72981002	0.95[ASN][1000 genomes]
rs73866061	0.95[ASN][1000 genomes]
rs7612306	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv4034	chr3:139034976-139080133	Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139032400-139048000	Weak transcription	Right Atrium	heart
2	chr3:139037400-139047800	Weak transcription	NHDF-Ad	bronchial
3	chr3:139037800-139047600	Weak transcription	Hela-S3	cervix
4	chr3:139038400-139048000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:139043600-139048000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:139044800-139047800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:139044800-139047800	Enhancers	K562	blood
8	chr3:139045000-139048000	Weak transcription	Pancreas	Pancrea
9	chr3:139045600-139048000	Enhancers	Fetal Thymus	thymus
10	chr3:139046600-139048000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:139046600-139048000	Weak transcription	Gastric	stomach
12	chr3:139046800-139048000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:139046800-139048000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:139047000-139048000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:139047000-139048000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:139047000-139048200	Enhancers	HSMM	muscle
17	chr3:139047000-139048600	Enhancers	Primary T cells from cord blood	blood
18	chr3:139047000-139048600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:139047200-139047600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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