Variant report

Variant	rs6770607
Chromosome Location	chr3:111460700-111460701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111452077..111454237-chr3:111460686..111462940,2	K562	blood:
2	chr3:111459238..111460946-chr3:111462346..111465281,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4277659	0.90[AFR][1000 genomes]
rs4309695	0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4396865	0.90[AFR][1000 genomes]
rs4464420	0.95[AFR][1000 genomes]
rs4603931	0.90[AFR][1000 genomes]
rs6438010	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591290	chr3:111427455-111462570	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111454800-111464400	Weak transcription	Placenta	Placenta
2	chr3:111455000-111461000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr3:111455800-111461000	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:111456200-111465600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:111458000-111467000	Weak transcription	Right Ventricle	heart
6	chr3:111458600-111462200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:111458600-111464400	Weak transcription	Psoas Muscle	Psoas
8	chr3:111458600-111467200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:111458800-111461800	Weak transcription	Adipose Nuclei	Adipose
10	chr3:111458800-111464800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:111458800-111466800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:111459000-111462200	Weak transcription	Colon Smooth Muscle	Colon
13	chr3:111459000-111466400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:111459000-111466400	Weak transcription	NHDF-Ad	bronchial
15	chr3:111459000-111466600	Weak transcription	Stomach Mucosa	stomach
16	chr3:111459200-111462200	Weak transcription	Pancreas	Pancrea
17	chr3:111459200-111464600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:111459200-111466400	Weak transcription	Gastric	stomach
19	chr3:111459200-111466600	Weak transcription	Osteobl	bone
20	chr3:111459400-111465600	Weak transcription	HepG2	liver
21	chr3:111459800-111464200	Weak transcription	Hela-S3	cervix
22	chr3:111460200-111461800	Weak transcription	Liver	Liver
23	chr3:111460200-111464800	Weak transcription	A549	lung
24	chr3:111460400-111460800	Weak transcription	Fetal Kidney	kidney
25	chr3:111460400-111464200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:111460400-111464400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:111460400-111464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:111460400-111464600	Weak transcription	HMEC	breast
29	chr3:111460600-111464600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links