Variant report

Variant	rs67710699
Chromosome Location	chr2:145198940-145198941
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:145197694..145199752-chr2:145203612..145206224,2	MCF-7	breast:
2	chr2:145197489..145199273-chr2:145272443..145274142,2	K562	blood:
3	chr2:145198022..145202619-chr2:145206849..145215090,11	K562	blood:
4	chr2:145197698..145202447-chr2:145209802..145215980,7	K562	blood:
5	chr2:145198751..145201747-chr2:145274467..145276424,2	K562	blood:
6	chr2:145196931..145199466-chr2:145218622..145221129,2	K562	blood:

Variant related genes	Relation type
ENSG00000213410	Chromatin interaction
ENSG00000238057	Chromatin interaction
ENSG00000169554	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12996983	0.87[AMR][1000 genomes]
rs13013418	1.00[ASN][1000 genomes]
rs17738837	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34227912	0.87[AMR][1000 genomes]
rs67375672	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv532756	chr2:144746353-145315596	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1008032	chr2:144840552-145234229	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv997624	chr2:144906679-145294503	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv535952	chr2:144906679-145294503	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv532757	chr2:144922143-145263446	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv916172	chr2:144970681-145425713	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
12	nsv948474	chr2:145035890-145436665	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv535953	chr2:145099512-145336083	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
14	nsv535954	chr2:145128008-145311097	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
15	nsv535955	chr2:145143961-145298714	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv535956	chr2:145178224-145311097	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
17	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
18	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
19	nsv535958	chr2:145190081-145285400	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145157800-145206200	Weak transcription	Lung	lung
2	chr2:145162600-145206600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:145179000-145210200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:145185600-145203000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:145189200-145199600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:145189200-145206600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:145190000-145201000	Weak transcription	Fetal Kidney	kidney
8	chr2:145190800-145199600	Weak transcription	Osteobl	bone
9	chr2:145190800-145205200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:145190800-145206200	Enhancers	Brain Substantia Nigra	brain
11	chr2:145191000-145201000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:145191600-145200000	Genic enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:145192200-145202000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr2:145193000-145202000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr2:145194800-145210600	Weak transcription	Gastric	stomach
16	chr2:145195200-145199600	Weak transcription	Fetal Intestine Small	intestine
17	chr2:145195200-145201000	Weak transcription	HUVEC	blood vessel
18	chr2:145195200-145201200	Enhancers	Fetal Brain Male	brain
19	chr2:145195600-145199600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr2:145195800-145199000	Enhancers	Fetal Brain Female	brain
21	chr2:145195800-145202200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:145196000-145199800	Enhancers	Brain Angular Gyrus	brain
23	chr2:145196000-145201400	Weak transcription	A549	lung
24	chr2:145196000-145204000	Enhancers	Brain Anterior Caudate	brain
25	chr2:145196200-145199000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr2:145196200-145201800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr2:145196200-145202400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:145196200-145203400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr2:145196200-145204000	Enhancers	Brain Cingulate Gyrus	brain
30	chr2:145196400-145199400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr2:145196400-145199600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:145196400-145199800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:145196600-145199600	Enhancers	Primary B cells from peripheral blood	blood
34	chr2:145196600-145201400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:145196600-145201600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:145196600-145202000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr2:145196800-145199800	Genic enhancers	Primary hematopoietic stem cells	blood
38	chr2:145196800-145200200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:145196800-145201000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr2:145197000-145199400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr2:145197000-145199800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:145197000-145201800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr2:145197000-145201800	Weak transcription	Aorta	Aorta
44	chr2:145197000-145212400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:145197200-145202000	Weak transcription	Fetal Muscle Leg	muscle
46	chr2:145198200-145199000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:145198200-145199000	Enhancers	Placenta	Placenta
48	chr2:145198200-145199000	Enhancers	Ovary	ovary
49	chr2:145198200-145199000	Enhancers	Psoas Muscle	Psoas
50	chr2:145198200-145199000	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links