Variant report

Variant	rs6771494
Chromosome Location	chr3:140784929-140784930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140782511..140785350-chr3:140792921..140794807,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1426962	0.83[AFR][1000 genomes]
rs1426963	0.83[AFR][1000 genomes]
rs59279694	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6439977	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6804474	0.82[ASN][1000 genomes]
rs7622090	0.81[AFR][1000 genomes]
rs890528	0.85[AFR][1000 genomes]
rs890529	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs919157	0.89[AFR][1000 genomes]
rs9817591	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9823690	0.81[AFR][1000 genomes]
rs9882989	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432488	chr3:140752302-140790302	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140776000-140787600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:140776600-140787200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:140777400-140795000	Weak transcription	Fetal Brain Female	brain
4	chr3:140777600-140785200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:140777600-140789600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:140779000-140785400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:140779400-140785400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:140779400-140788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:140779600-140788200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:140782600-140785200	Enhancers	Pancreas	Pancrea
11	chr3:140782800-140785400	Enhancers	Right Ventricle	heart
12	chr3:140782800-140787400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:140782800-140787800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:140782800-140789200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:140783000-140785200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:140783000-140788000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:140783200-140786000	Weak transcription	Thymus	Thymus
18	chr3:140783600-140794200	Weak transcription	Fetal Kidney	kidney
19	chr3:140783800-140788200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:140784200-140785000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:140784200-140785000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr3:140784200-140785200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:140784200-140785400	Weak transcription	Right Atrium	heart
24	chr3:140784400-140785800	Weak transcription	Fetal Lung	lung
25	chr3:140784400-140785800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:140784400-140788400	Strong transcription	Dnd41	blood
27	chr3:140784600-140785800	Weak transcription	Fetal Heart	heart
28	chr3:140784600-140786400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:140784800-140785200	Enhancers	Lung	lung
30	chr3:140784800-140785400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:140784800-140785800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr3:140784800-140785800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:140784800-140786000	Strong transcription	Fetal Stomach	stomach
34	chr3:140784800-140787200	Genic enhancers	Fetal Muscle Leg	muscle
35	chr3:140784800-140787800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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