Variant report

Variant	rs67718311
Chromosome Location	chr7:140325661-140325662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140177738..140180621-chr7:140323233..140327044,4	MCF-7	breast:
2	chr7:140320485..140322777-chr7:140324198..140327820,3	K562	blood:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1681778	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2109927	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269227	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs269230	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1021133	chr7:140270797-140338653	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029128	chr7:140293389-140335570	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140267800-140326000	Weak transcription	Gastric	stomach
2	chr7:140287600-140326000	Weak transcription	Fetal Brain Male	brain
3	chr7:140296000-140326000	Weak transcription	Fetal Heart	heart
4	chr7:140302200-140326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:140302400-140326200	Weak transcription	Fetal Brain Female	brain
6	chr7:140302800-140326000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:140307600-140326000	Weak transcription	Spleen	Spleen
8	chr7:140310800-140326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:140319200-140325800	Weak transcription	Brain Germinal Matrix	brain
10	chr7:140320600-140326000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:140320600-140326000	Weak transcription	Left Ventricle	heart
12	chr7:140320600-140326000	Weak transcription	Right Atrium	heart
13	chr7:140320800-140326200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:140320800-140326200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:140321600-140326000	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:140321600-140326000	Weak transcription	Brain Substantia Nigra	brain
17	chr7:140321600-140326400	Genic enhancers	Fetal Stomach	stomach
18	chr7:140321800-140325800	Weak transcription	HSMMtube	muscle
19	chr7:140321800-140326000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:140321800-140326000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:140322800-140325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:140322800-140327800	Weak transcription	Psoas Muscle	Psoas
23	chr7:140323600-140326000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:140323600-140326800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr7:140323800-140326600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:140324000-140326000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:140324200-140325800	Enhancers	A549	lung
28	chr7:140324400-140325800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:140324400-140325800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:140324400-140325800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:140324400-140325800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:140324400-140325800	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:140324400-140325800	Weak transcription	Fetal Intestine Small	intestine
34	chr7:140324400-140325800	Weak transcription	Fetal Lung	lung
35	chr7:140324400-140326000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:140324400-140326000	Weak transcription	Fetal Intestine Large	intestine
37	chr7:140324400-140326000	Weak transcription	Fetal Kidney	kidney
38	chr7:140324400-140326000	Weak transcription	Ovary	ovary
39	chr7:140324400-140326000	Weak transcription	Right Ventricle	heart
40	chr7:140324400-140326800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:140324400-140327400	Weak transcription	Liver	Liver
42	chr7:140324400-140327600	Enhancers	Fetal Muscle Trunk	muscle
43	chr7:140324600-140325800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr7:140324600-140325800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:140324600-140325800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:140324600-140325800	Weak transcription	Adipose Nuclei	Adipose
47	chr7:140324600-140325800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr7:140324600-140325800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr7:140324600-140325800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr7:140324600-140326000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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