Variant report

Variant	rs67729419
Chromosome Location	chr12:41998378-41998379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10082912	0.81[AMR][1000 genomes]
rs10082917	0.80[AMR][1000 genomes]
rs10082993	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10083094	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11181043	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11181044	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11181045	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11181047	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11181048	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11181049	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11615895	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12296608	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12298684	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12310395	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12318860	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12811396	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12813466	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12819302	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1390373	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1495772	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1495779	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4351877	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4378453	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4503605	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61940383	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs66916324	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7134174	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7968709	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41993200-41999000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:41998000-42000600	Enhancers	Primary monocytes fromperipheralblood	blood

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