Variant report
| Variant | rs6773187 |
|---|---|
| Chromosome Location | chr3:110086690-110086691 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:110064640..110067348-chr3:110084597..110086905,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs12634736 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13064680 | 0.82[ASN][1000 genomes] |
| rs13090456 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs13091887 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1987369 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35949467 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7610542 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829668 | chr3:109956403-110095215 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv460818 | chr3:110007205-110155824 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv591272 | chr3:110007205-110155824 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv2757885 | chr3:110013166-110095330 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv2759168 | chr3:110013166-110095330 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv829669 | chr3:110022724-110188397 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv460819 | chr3:110080893-110194026 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | nsv877336 | chr3:110083045-110143891 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 10 | nsv470838 | chr3:110083045-110194026 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:110085800-110086800 | Enhancers | K562 | blood |
| 2 | chr3:110085800-110087200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
