Variant report

Variant	rs6773836
Chromosome Location	chr3:59432702-59432703
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10049248	1.00[AMR][1000 genomes]
rs28488791	1.00[AMR][1000 genomes]
rs3913592	1.00[AMR][1000 genomes]
rs9814139	1.00[AMR][1000 genomes]
rs9828039	1.00[AMR][1000 genomes]
rs9844389	1.00[AMR][1000 genomes]
rs9852412	1.00[AMR][1000 genomes]
rs9857194	1.00[AMR][1000 genomes]
rs9866808	1.00[AMR][1000 genomes]
rs9869111	1.00[AMR][1000 genomes]
rs9874218	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59418800-59435200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:59428200-59437400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:59429000-59433200	Enhancers	GM12878-XiMat	blood
4	chr3:59430000-59433000	Enhancers	Primary T cells from cord blood	blood
5	chr3:59430000-59435000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:59430200-59437400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:59430400-59434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:59430400-59437000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:59430400-59441000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:59430600-59433000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:59430800-59432800	Weak transcription	NHEK	skin
12	chr3:59430800-59435000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:59431200-59433000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:59431200-59433200	Weak transcription	Psoas Muscle	Psoas
15	chr3:59431200-59435600	Weak transcription	Dnd41	blood
16	chr3:59431400-59433200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:59431400-59433200	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:59431600-59433000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr3:59431600-59434800	Weak transcription	Thymus	Thymus
20	chr3:59432000-59432800	Enhancers	Fetal Kidney	kidney
21	chr3:59432200-59433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:59432200-59433600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr3:59432400-59433000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:59432400-59433200	Enhancers	Fetal Thymus	thymus
25	chr3:59432400-59433200	Enhancers	Ovary	ovary
26	chr3:59432400-59433400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:59432400-59433400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:59432400-59433400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:59432400-59433600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:59432400-59434600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr3:59432600-59437400	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links