Variant report

Variant	rs6773840
Chromosome Location	chr3:139095593-139095594
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:139095204..139096886-chr3:139101729..139104066,2	K562	blood:
2	chr3:139091608..139097785-chr3:139099918..139103332,6	K562	blood:
3	chr3:139083191..139085285-chr3:139093767..139096012,3	K562	blood:
4	chr3:139092808..139095647-chr3:139097281..139099201,2	MCF-7	breast:
5	chr3:139089698..139093980-chr3:139094699..139097879,5	K562	blood:
6	chr3:139090377..139093980-chr3:139095333..139098984,3	K562	blood:
7	chr3:139066162..139067980-chr3:139094289..139096251,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175110	Chromatin interaction
ENSG00000184432	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11924964	1.00[ASN][1000 genomes]
rs11928018	1.00[ASN][1000 genomes]
rs12107249	1.00[ASN][1000 genomes]
rs1599926	1.00[ASN][1000 genomes]
rs2307030	1.00[ASN][1000 genomes]
rs34994114	0.94[ASN][1000 genomes]
rs56176652	1.00[ASN][1000 genomes]
rs57459537	0.81[ASN][1000 genomes]
rs57490542	0.94[ASN][1000 genomes]
rs60077646	0.88[ASN][1000 genomes]
rs61613815	0.94[ASN][1000 genomes]
rs6767503	1.00[ASN][1000 genomes]
rs6774691	0.88[ASN][1000 genomes]
rs6781318	1.00[ASN][1000 genomes]
rs6788896	0.88[ASN][1000 genomes]
rs6797945	1.00[ASN][1000 genomes]
rs72986758	1.00[ASN][1000 genomes]
rs7612306	0.94[ASN][1000 genomes]
rs7649535	1.00[ASN][1000 genomes]
rs9756378	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949635	chr3:139091219-139367043	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139064400-139097200	Strong transcription	Fetal Muscle Leg	muscle
2	chr3:139065000-139096200	Strong transcription	Fetal Intestine Large	intestine
3	chr3:139065000-139101200	Strong transcription	Primary T cells from cord blood	blood
4	chr3:139065000-139103800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:139065000-139103800	Strong transcription	HSMM	muscle
6	chr3:139065000-139104000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:139065200-139096800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:139065200-139098000	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:139065200-139102000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:139065200-139102200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr3:139065400-139097600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:139065400-139102200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr3:139065400-139102400	Strong transcription	Duodenum Mucosa	Duodenum
14	chr3:139065400-139102600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:139065400-139102600	Strong transcription	Osteobl	bone
16	chr3:139065400-139103600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr3:139065400-139103800	Strong transcription	Fetal Thymus	thymus
18	chr3:139065600-139100200	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr3:139065600-139101800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:139065600-139102400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:139065600-139102400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:139065600-139102400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr3:139065600-139103600	Strong transcription	HUVEC	blood vessel
24	chr3:139065600-139103600	Strong transcription	NH-A	brain
25	chr3:139065600-139103800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr3:139065600-139103800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:139065800-139096200	Strong transcription	Liver	Liver
28	chr3:139065800-139098200	Strong transcription	Primary hematopoietic stem cells	blood
29	chr3:139065800-139098200	Strong transcription	HMEC	breast
30	chr3:139065800-139101600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr3:139065800-139101600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr3:139065800-139102400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:139065800-139102400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr3:139065800-139102600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:139065800-139102800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:139065800-139103200	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr3:139065800-139103600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr3:139065800-139104400	Strong transcription	Dnd41	blood
39	chr3:139066000-139098200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:139066000-139098200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr3:139066000-139101800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:139066000-139103600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr3:139066200-139099600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:139066200-139102400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:139066200-139103800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:139066400-139102400	Strong transcription	Placenta	Placenta
47	chr3:139067000-139098000	Strong transcription	Fetal Kidney	kidney
48	chr3:139067000-139098000	Strong transcription	Ovary	ovary
49	chr3:139069200-139096400	Strong transcription	Thymus	Thymus
50	chr3:139071200-139102200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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