Variant report

Variant	rs6774126
Chromosome Location	chr3:109882494-109882495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12488462	0.90[EUR][1000 genomes]
rs1356633	0.90[EUR][1000 genomes]
rs1381360	1.00[EUR][1000 genomes]
rs1519006	0.90[EUR][1000 genomes]
rs4346576	0.90[EUR][1000 genomes]
rs73853159	1.00[ASN][1000 genomes]
rs73853160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612345	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829667	chr3:109786662-109939671	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	nsv432472	chr3:109871824-109942107	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv432473	chr3:109875668-109918190	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2754324	chr3:109875668-109933826	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109876600-109884400	Weak transcription	Aorta	Aorta
2	chr3:109881800-109882800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:109882000-109883600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:109882200-109884000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:109882200-109884200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:109882400-109882600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:109882400-109882600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr3:109882400-109883600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:109882400-109883800	Weak transcription	Ovary	ovary
10	chr3:109882400-109884000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:109882400-109884000	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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