Variant report

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16992031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6040232	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6040233	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10881400-10891200	Weak transcription	Left Ventricle	heart
2	chr20:10883800-10891200	Weak transcription	Aorta	Aorta
3	chr20:10884200-10891200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr20:10886600-10899000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:10887200-10891200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr20:10887800-10891200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:10888400-10900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:10890600-10891400	Enhancers	Fetal Kidney	kidney
9	chr20:10890600-10891400	Enhancers	Fetal Lung	lung
10	chr20:10890600-10891800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr20:10891000-10891200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr20:10891000-10891200	Enhancers	Ovary	ovary
13	chr20:10891000-10891400	Enhancers	Pancreas	Pancrea
14	chr20:10891000-10891400	Enhancers	HUVEC	blood vessel
15	chr20:10891000-10891600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr20:10891000-10891600	Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr20:10891000-10891800	Enhancers	Lung	lung
18	chr20:10891000-10891800	Enhancers	Rectal Smooth Muscle	rectum
19	chr20:10891000-10892000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr20:10891000-10892400	Enhancers	Fetal Stomach	stomach
21	chr20:10891000-10892400	Enhancers	Stomach Mucosa	stomach
22	chr20:10891000-10892600	Enhancers	Fetal Muscle Leg	muscle

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