Variant report

Variant	rs6774609
Chromosome Location	chr3:78789920-78789921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10049016	1.00[EUR][1000 genomes]
rs28497208	1.00[EUR][1000 genomes]
rs3773204	1.00[EUR][1000 genomes]
rs3821594	1.00[EUR][1000 genomes]
rs72908874	1.00[EUR][1000 genomes]
rs7642059	1.00[EUR][1000 genomes]
rs9839459	1.00[EUR][1000 genomes]
rs9851220	1.00[EUR][1000 genomes]
rs9862358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9864178	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2753211	chr3:78784269-78809116	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3354662	chr3:78789062-78793160	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78772000-78792200	Weak transcription	HepG2	liver
2	chr3:78783200-78797000	Weak transcription	Fetal Lung	lung
3	chr3:78783800-78803400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:78787400-78791200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:78787400-78802800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:78787400-78814800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:78787600-78791200	Weak transcription	Fetal Brain Female	brain
8	chr3:78787600-78792600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:78787600-78794200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:78787800-78791800	Weak transcription	HSMM	muscle
11	chr3:78787800-78800000	Weak transcription	HMEC	breast
12	chr3:78788000-78791400	Weak transcription	Fetal Brain Male	brain
13	chr3:78788000-78796800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:78788400-78790800	Weak transcription	HUVEC	blood vessel
15	chr3:78788400-78803400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:78788800-78802600	Weak transcription	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links