Variant report

Variant	rs67751869
Chromosome Location	chr4:54568834-54568835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:54568809-54569273	HUVEC	blood vessel:	n/a	n/a
2	MEF2A	chr4:54568781-54569408	GM12878	blood:	n/a	chr4:54569076-54569090 chr4:54569078-54569089
3	MAZ	chr4:54568551-54569456	GM12878	blood:	n/a	n/a
4	MEF2C	chr4:54568759-54569452	GM12878	blood:	n/a	chr4:54569076-54569090 chr4:54569078-54569089 chr4:54569074-54569089
5	ZNF143	chr4:54568570-54568981	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr4:54568780-54568930	RPTEC	kidney:	n/a	n/a
7	MAX	chr4:54568653-54569397	ECC-1	luminal epithelium:	n/a	chr4:54569168-54569178
8	RAD21	chr4:54568491-54568897	H1-hESC	embryonic stem cell:	n/a	n/a
9	BCLAF1	chr4:54568668-54569520	GM12878	blood:	n/a	chr4:54569093-54569102 chr4:54568729-54568742
10	POLR2A	chr4:54568449-54569563	GM12878	blood:	n/a	n/a
11	TCF12	chr4:54568434-54569979	SK-N-SH	brain:	n/a	n/a
12	PAX5	chr4:54568582-54569575	GM12878	blood:	n/a	n/a
13	POLR2A	chr4:54568661-54569067	IMR90	lung:	n/a	n/a
14	POLR2A	chr4:54568268-54569546	GM19099	blood:	n/a	n/a
15	SP1	chr4:54568666-54569236	A549	lung:	n/a	chr4:54568962-54568974 chr4:54568963-54568973 chr4:54568963-54568972
16	FOXM1	chr4:54568750-54569487	GM12878	blood:	n/a	n/a
17	CUX1	chr4:54568375-54569502	GM12878	blood:	n/a	n/a
18	TCF12	chr4:54568786-54569384	GM12878	blood:	n/a	n/a
19	E2F4	chr4:54568808-54569203	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr4:54568616-54569591	HUVEC	blood vessel:	n/a	n/a
21	ELF1	chr4:54568676-54569327	GM12878	blood:	n/a	n/a
22	BRCA1	chr4:54568745-54569423	GM12878	blood:	n/a	n/a
23	RFX5	chr4:54568532-54569261	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr4:54568503-54569610	U87	brain:	n/a	n/a
25	POLR2A	chr4:54568791-54569140	SK-N-SH	brain:	n/a	n/a
26	RELA	chr4:54568492-54569428	GM19193	blood:	n/a	n/a
27	MTA3	chr4:54568463-54569634	GM12878	blood:	n/a	n/a
28	NFIC	chr4:54568476-54569496	GM12878	blood:	n/a	chr4:54569290-54569307 chr4:54569291-54569307
29	RELA	chr4:54568515-54569491	GM10847	blood:	n/a	n/a
30	PML	chr4:54568397-54569471	GM12878	blood:	n/a	n/a
31	YY1	chr4:54568498-54569709	SK-N-SH_RA	brain:	n/a	chr4:54568734-54568745
32	CTCF	chr4:54568431-54569403	GM12878	blood:	n/a	n/a
33	KAP1	chr4:54568463-54569568	U2OS	brain:	n/a	n/a
34	FOXA1	chr4:54568812-54569208	HepG2	liver:	n/a	n/a
35	BRCA1	chr4:54568706-54569407	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr4:54568317-54569510	GM18505	blood:	n/a	n/a
37	CTCF	chr4:54568780-54568930	HVMF	connective:	n/a	n/a
38	NFIC	chr4:54568607-54569652	ECC-1	luminal epithelium:	n/a	chr4:54569290-54569307 chr4:54569291-54569307
39	REST	chr4:54568763-54569263	PFSK-1	brain:	n/a	n/a
40	NFIC	chr4:54568565-54569622	SK-N-SH	brain:	n/a	chr4:54569290-54569307 chr4:54569291-54569307
41	MAX	chr4:54568678-54569448	ECC-1	luminal epithelium:	n/a	chr4:54569168-54569178
42	RELA	chr4:54568573-54569585	GM18505	blood:	n/a	n/a
43	HMGN3	chr4:54568693-54568999	K562	blood:	n/a	n/a
44	POLR2A	chr4:54568565-54569028	GM12878	blood:	n/a	n/a
45	EBF1	chr4:54568416-54569716	GM12878	blood:	n/a	chr4:54569214-54569225 chr4:54569215-54569224 chr4:54569321-54569330 chr4:54569321-54569330 chr4:54569215-54569224 chr4:54569213-54569226 chr4:54569215-54569225 chr4:54569320-54569330
46	RELA	chr4:54568542-54569633	GM12891	blood:	n/a	n/a
47	FOXA2	chr4:54568579-54569399	A549	lung:	n/a	n/a
48	E2F6	chr4:54568799-54569434	H1-hESC	embryonic stem cell:	n/a	n/a
49	REST	chr4:54568785-54569065	SK-N-SH	brain:	n/a	n/a
50	KAP1	chr4:54568533-54569662	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54568125..54570977-chr4:54571339..54573651,2	K562	blood:

Variant related genes	Relation type
LNX1	TF binding region

rs_ID	r²[population]
rs3762881	0.82[AFR][1000 genomes]
rs66529708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73250983	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54568000-54569000	Enhancers	Fetal Lung	lung
2	chr4:54568000-54569600	Flanking Active TSS	GM12878-XiMat	blood
3	chr4:54568000-54569800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:54568400-54569000	Enhancers	HMEC	breast
5	chr4:54568400-54569200	Active TSS	HepG2	liver
6	chr4:54568400-54569400	Active TSS	Brain Hippocampus Middle	brain
7	chr4:54568400-54569600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:54568400-54569600	Flanking Active TSS	Liver	Liver
9	chr4:54568400-54569600	Enhancers	Fetal Brain Male	brain
10	chr4:54568400-54569800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:54568400-54569800	Flanking Active TSS	Hela-S3	cervix
12	chr4:54568600-54569000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr4:54568600-54569000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:54568600-54569000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:54568600-54569000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:54568600-54569000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:54568600-54569000	Enhancers	Aorta	Aorta
18	chr4:54568600-54569000	Active TSS	Brain Germinal Matrix	brain
19	chr4:54568600-54569000	Flanking Active TSS	Esophagus	oesophagus
20	chr4:54568600-54569000	Flanking Active TSS	Right Ventricle	heart
21	chr4:54568600-54569000	Active TSS	Thymus	Thymus
22	chr4:54568600-54569000	Active TSS	A549	lung
23	chr4:54568600-54569200	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr4:54568600-54569200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:54568600-54569200	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr4:54568600-54569200	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr4:54568600-54569200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:54568600-54569200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:54568600-54569200	Active TSS	Brain Angular Gyrus	brain
30	chr4:54568600-54569200	Active TSS	Brain Anterior Caudate	brain
31	chr4:54568600-54569200	Flanking Active TSS	Fetal Intestine Small	intestine
32	chr4:54568600-54569200	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr4:54568600-54569200	Active TSS	Left Ventricle	heart
34	chr4:54568600-54569200	Active TSS	Psoas Muscle	Psoas
35	chr4:54568600-54569200	Active TSS	Rectal Smooth Muscle	rectum
36	chr4:54568600-54569200	Flanking Active TSS	NHEK	skin
37	chr4:54568600-54569400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:54568600-54569400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr4:54568600-54569400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr4:54568600-54569400	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr4:54568600-54569400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr4:54568600-54569400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:54568600-54569400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:54568600-54569400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr4:54568600-54569400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr4:54568600-54569400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:54568600-54569400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr4:54568600-54569400	Active TSS	Colon Smooth Muscle	Colon
49	chr4:54568600-54569400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
50	chr4:54568600-54569400	Active TSS	Fetal Brain Female	brain

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