Variant report
| Variant | rs6775511 |
|---|---|
| Chromosome Location | chr3:150404270-150404271 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000181788 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10935818 | 0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs13082773 | 0.91[ASN][1000 genomes] |
| rs2116682 | 0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4680090 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4680094 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4680107 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56009154 | 0.93[EUR][1000 genomes] |
| rs59341156 | 0.92[EUR][1000 genomes] |
| rs73004840 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73869266 | 0.91[EUR][1000 genomes] |
| rs9870650 | 0.90[JPT][hapmap];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532662 | chr3:150180747-150633414 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
