Variant report

Variant	rs6776104
Chromosome Location	chr3:133892524-133892525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133880944..133883730-chr3:133890634..133894226,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7614434	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
2	chr3:133864200-133899800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:133866200-133898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:133871800-133919200	Weak transcription	K562	blood
5	chr3:133873400-133907400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:133874400-133929400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:133874600-133933600	Weak transcription	Colonic Mucosa	Colon
8	chr3:133877600-133907400	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:133877600-133935200	Weak transcription	Psoas Muscle	Psoas
10	chr3:133877800-133894200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:133877800-133894400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:133877800-133894600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:133877800-133920200	Weak transcription	Brain Substantia Nigra	brain
14	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
15	chr3:133878000-133893000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:133878000-133894400	Weak transcription	NHDF-Ad	bronchial
17	chr3:133878200-133893400	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:133878200-133901600	Weak transcription	Fetal Brain Male	brain
19	chr3:133878400-133893000	Weak transcription	Hela-S3	cervix
20	chr3:133878400-133894400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:133878400-133907400	Weak transcription	Brain Angular Gyrus	brain
22	chr3:133878600-133893800	Weak transcription	Right Ventricle	heart
23	chr3:133879000-133892800	Weak transcription	Aorta	Aorta
24	chr3:133879000-133894400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:133879000-133894600	Weak transcription	Gastric	stomach
26	chr3:133881800-133908800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:133882400-133897400	Weak transcription	Fetal Kidney	kidney
28	chr3:133884600-133900000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr3:133885000-133893600	Weak transcription	Brain Germinal Matrix	brain
30	chr3:133885000-133902400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:133885400-133894400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:133885600-133892800	Weak transcription	Fetal Thymus	thymus
33	chr3:133885600-133894200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr3:133885600-133897800	Weak transcription	A549	lung
35	chr3:133885600-133907400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:133885600-133919600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr3:133885800-133892800	Weak transcription	NHEK	skin
38	chr3:133886800-133896400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:133887200-133897000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:133887600-133893200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:133887600-133895000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:133887600-133895200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:133887600-133896600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:133887600-133900400	Strong transcription	Primary T cells from cord blood	blood
45	chr3:133887600-133902800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:133887600-133903400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:133887800-133895200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:133887800-133897400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr3:133887800-133900800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:133887800-133900800	Strong transcription	Primary T helper cells fromperipheralblood	blood

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