Variant report

Variant	rs6776453
Chromosome Location	chr3:141111836-141111837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141110266..141112261-chr3:141118799..141120629,2	K562	blood:
2	chr3:141105114..141109400-chr3:141110714..141114330,6	K562	blood:
3	chr3:141110512..141116314-chr3:141119698..141124103,10	MCF-7	breast:
4	chr3:141105998..141108127-chr3:141109213..141112291,3	MCF-7	breast:
5	chr3:141110442..141112822-chr3:141113181..141115807,2	MCF-7	breast:
6	chr3:141111002..141115062-chr3:141118587..141124023,6	MCF-7	breast:
7	chr3:141110266..141112911-chr3:141118799..141121045,2	K562	blood:
8	chr3:141100225..141102458-chr3:141109602..141112183,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16851365	1.00[MEX][hapmap]
rs16851408	1.00[MEX][hapmap]
rs6777525	1.00[MEX][hapmap]
rs6790603	1.00[MEX][hapmap]
rs6801329	1.00[MEX][hapmap]
rs9845854	1.00[MEX][hapmap]
rs9874459	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141089200-141115800	Weak transcription	Psoas Muscle	Psoas
2	chr3:141094800-141112200	Weak transcription	Spleen	Spleen
3	chr3:141098600-141115200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:141100600-141112400	Weak transcription	Lung	lung
5	chr3:141102800-141112000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:141106000-141112200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:141106000-141115400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:141106000-141115800	Weak transcription	Right Ventricle	heart
9	chr3:141106000-141117000	Strong transcription	Fetal Intestine Large	intestine
10	chr3:141106000-141119000	Weak transcription	Colonic Mucosa	Colon
11	chr3:141106600-141113600	Weak transcription	K562	blood
12	chr3:141106800-141114800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:141106800-141119200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:141108000-141112000	Weak transcription	HSMMtube	muscle
15	chr3:141108000-141115200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:141108000-141116000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:141108200-141112000	Weak transcription	HMEC	breast
18	chr3:141108200-141112400	Strong transcription	HSMM	muscle
19	chr3:141108200-141113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:141108200-141115200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr3:141108400-141114600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:141108400-141115400	Weak transcription	Liver	Liver
23	chr3:141108400-141118200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:141108400-141118600	Weak transcription	Small Intestine	intestine
25	chr3:141108800-141112400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:141108800-141114800	Weak transcription	HUVEC	blood vessel
27	chr3:141109000-141112200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:141109200-141112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:141109200-141112000	Weak transcription	NHEK	skin
30	chr3:141109400-141112000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:141109600-141113200	Strong transcription	Fetal Intestine Small	intestine
32	chr3:141109800-141112600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:141109800-141112800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:141109800-141113400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr3:141110000-141112600	Enhancers	HepG2	liver
36	chr3:141110000-141112800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:141110200-141112000	Enhancers	Fetal Heart	heart
38	chr3:141110200-141112800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:141110200-141112800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:141110200-141112800	Enhancers	Brain Angular Gyrus	brain
41	chr3:141110200-141112800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:141110200-141112800	Enhancers	Fetal Lung	lung
43	chr3:141110200-141112800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr3:141110200-141113200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr3:141110400-141112200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr3:141110400-141112800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:141110400-141112800	Enhancers	Brain Substantia Nigra	brain
48	chr3:141110400-141118000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:141110600-141112000	Weak transcription	NHLF	lung
50	chr3:141110600-141112400	Genic enhancers	A549	lung

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