Variant report

Variant	rs6778178
Chromosome Location	chr3:143039955-143039956
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12636732	1.00[CEU][hapmap];0.90[GIH][hapmap];0.95[EUR][1000 genomes]
rs16853411	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56226148	0.95[EUR][1000 genomes]
rs6765602	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765630	1.00[CEU][hapmap]
rs6806620	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992112	0.95[EUR][1000 genomes]
rs72992151	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143022400-143048200	Weak transcription	Psoas Muscle	Psoas
2	chr3:143025600-143040000	Weak transcription	Right Atrium	heart
3	chr3:143026600-143047400	Weak transcription	Spleen	Spleen
4	chr3:143029400-143045800	Weak transcription	Adipose Nuclei	Adipose
5	chr3:143029800-143045200	Weak transcription	Primary T cells from cord blood	blood
6	chr3:143033800-143048400	Weak transcription	Fetal Stomach	stomach
7	chr3:143034400-143047400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:143034400-143048600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:143035000-143042800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:143037800-143045800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:143038200-143045600	Weak transcription	Fetal Lung	lung
12	chr3:143038800-143041400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:143039200-143045200	Weak transcription	Fetal Thymus	thymus
14	chr3:143039400-143040800	Enhancers	Primary B cells from cord blood	blood
15	chr3:143039600-143040400	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:143039800-143040400	Enhancers	K562	blood
17	chr3:143039800-143040600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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