Variant report

Variant	rs6778206
Chromosome Location	chr3:59802813-59802814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs517711	1.00[CHD][hapmap]
rs6769366	1.00[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs683908	1.00[CHD][hapmap]
rs780362	1.00[CHD][hapmap]
rs9882591	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv460563	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590383	chr3:59772342-59827390	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv876837	chr3:59800539-59842644	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59770400-59825200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr3:59778200-59811200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:59796000-59804000	Weak transcription	Right Atrium	heart
4	chr3:59796200-59803000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:59796800-59803000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:59796800-59803600	Weak transcription	Fetal Stomach	stomach
7	chr3:59797000-59803000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:59797000-59803000	Weak transcription	Brain Anterior Caudate	brain
9	chr3:59797000-59803600	Weak transcription	Brain Angular Gyrus	brain
10	chr3:59797000-59803600	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:59797000-59803600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:59797000-59803800	Weak transcription	Right Ventricle	heart
13	chr3:59797200-59803000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:59797200-59804000	Weak transcription	Fetal Lung	lung
15	chr3:59797800-59803000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:59798200-59803400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:59798200-59803400	Weak transcription	HSMMtube	muscle
18	chr3:59798600-59803000	Weak transcription	Osteobl	bone
19	chr3:59798600-59803600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:59798800-59803400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:59799000-59803000	Weak transcription	HSMM	muscle
22	chr3:59799600-59803000	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:59799600-59803000	Weak transcription	Psoas Muscle	Psoas
24	chr3:59799600-59803400	Weak transcription	Brain Germinal Matrix	brain
25	chr3:59799600-59803600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:59799800-59803000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:59799800-59803000	Weak transcription	Left Ventricle	heart
28	chr3:59799800-59803400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:59799800-59803400	Weak transcription	Fetal Heart	heart
30	chr3:59799800-59803800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:59800000-59803400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:59801400-59804000	Weak transcription	K562	blood
33	chr3:59801600-59803200	Strong transcription	Dnd41	blood
34	chr3:59801800-59804400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr3:59801800-59804600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr3:59801800-59804600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:59801800-59805000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:59801800-59805000	Enhancers	HMEC	breast
39	chr3:59801800-59805200	Enhancers	Placenta Amnion	Placenta Amnion
40	chr3:59801800-59805800	Enhancers	Fetal Brain Male	brain
41	chr3:59802000-59803000	Weak transcription	NHDF-Ad	bronchial
42	chr3:59802400-59803400	Weak transcription	HepG2	liver
43	chr3:59802400-59803800	Enhancers	H9 Cell Line	embryonic stem cell
44	chr3:59802400-59803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:59802400-59804200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr3:59802400-59804800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:59802600-59803000	Enhancers	NH-A	brain
48	chr3:59802600-59803600	Weak transcription	A549	lung
49	chr3:59802600-59803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:59802600-59804000	Enhancers	Muscle Satellite Cultured Cells	--

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