Variant report

Variant	rs6779257
Chromosome Location	chr3:134147089-134147090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:134091888..134095593-chr3:134142304..134147270,4	MCF-7	breast:
2	chr3:134110212..134112141-chr3:134146148..134148218,2	MCF-7	breast:
3	chr3:134146261..134149924-chr3:134150087..134151982,3	MCF-7	breast:
4	chr3:134145112..134147635-chr3:134150719..134152522,2	MCF-7	breast:
5	chr3:134139549..134143630-chr3:134144649..134147393,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114019	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55741251	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56790312	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59695967	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62269517	0.93[EUR][1000 genomes]
rs6779053	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73217392	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1007607	chr3:134131521-134156814	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134142000-134148800	Weak transcription	Spleen	Spleen
2	chr3:134142400-134147600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:134144800-134148200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:134145000-134147800	Enhancers	NH-A	brain
5	chr3:134145000-134148200	Enhancers	NHLF	lung
6	chr3:134145000-134148400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:134145000-134148400	Enhancers	Osteobl	bone
8	chr3:134145200-134147800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:134145200-134148000	Enhancers	NHDF-Ad	bronchial
10	chr3:134145200-134148200	Enhancers	HSMM	muscle
11	chr3:134145200-134148600	Enhancers	Hela-S3	cervix
12	chr3:134145200-134149200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:134145400-134147800	Enhancers	Placenta	Placenta
14	chr3:134145400-134148400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:134145400-134148400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:134145400-134148600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:134145400-134149600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:134145600-134147800	Enhancers	HMEC	breast
19	chr3:134145600-134148000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:134145800-134147600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:134146000-134147800	Enhancers	Pancreas	Pancrea
22	chr3:134146200-134147600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:134146200-134148600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:134146400-134147600	Weak transcription	Adipose Nuclei	Adipose
25	chr3:134146400-134149200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:134146400-134150400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:134146600-134147600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:134146600-134147600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:134146600-134147600	Enhancers	HepG2	liver
30	chr3:134146600-134148600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:134147000-134148000	Enhancers	NHEK	skin
32	chr3:134147000-134148400	Weak transcription	Esophagus	oesophagus
33	chr3:134147000-134148400	Enhancers	A549	lung

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