Variant report
| Variant | rs6780123 |
|---|---|
| Chromosome Location | chr3:85870148-85870149 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:85869951..85870538-chr3:86612290..86613009,2 | MCF-7 | breast: | |
| 2 | chr3:85870003..85870955-chr3:86294230..86295150,6 | MCF-7 | breast: | |
| 3 | chr3:85865485..85867730-chr3:85868016..85870182,2 | K562 | blood: | |
| 4 | chr3:85870032..85871016-chr3:86611753..86613106,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs6788960 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs6804920 | 1.00[YRI][hapmap] |
| rs7614938 | 1.00[YRI][hapmap] |
| rs7628159 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs7644078 | 1.00[YRI][hapmap] |
| rs7646294 | 1.00[YRI][hapmap] |
| rs7647384 | 1.00[AFR][1000 genomes] |
| rs9819517 | 1.00[AFR][1000 genomes] |
| rs9829109 | 1.00[YRI][hapmap] |
| rs9868988 | 1.00[YRI][hapmap] |
| rs9878177 | 1.00[YRI][hapmap] |
| rs9878265 | 1.00[YRI][hapmap] |
| rs9882260 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010541 | chr3:85505839-85870597 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv536625 | chr3:85505839-85870597 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv877106 | chr3:85814620-86006210 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv877107 | chr3:85814620-86037162 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
