Variant report

Variant	rs6780284
Chromosome Location	chr3:118879343-118879344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10049288	0.92[YRI][hapmap]
rs11508010	0.85[AFR][1000 genomes]
rs11508695	0.84[AFR][1000 genomes]
rs4077931	0.85[YRI][hapmap]
rs6763596	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[TSI][hapmap];1.00[EUR][1000 genomes]
rs6769729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777192	0.91[YRI][hapmap]
rs6783216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809457	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73854421	0.85[ASN][1000 genomes]
rs7619723	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9832079	0.83[YRI][hapmap]
rs9859907	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829692	chr3:118727772-118901711	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv18354	chr3:118855337-119000251	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118875200-118882600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:118877200-118880000	Weak transcription	A549	lung
3	chr3:118878800-118879400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:118879200-118880400	Enhancers	HMEC	breast
5	chr3:118879200-118881000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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