Variant report

Variant	rs6780355
Chromosome Location	chr3:150417593-150417594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000163645	Chromatin interaction
ENSG00000144895	Chromatin interaction
ENSG00000240137	Chromatin interaction
ENSG00000120742	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10935818	0.81[CHB][hapmap]
rs13062854	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13078022	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116682	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs4680090	0.86[CHD][hapmap]
rs4680107	0.88[CHD][hapmap]
rs6766256	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9870650	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6780355	DHX36	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150415800-150421000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:150416000-150420800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:150417000-150417800	Enhancers	HMEC	breast
4	chr3:150417000-150417800	Enhancers	NH-A	brain
5	chr3:150417000-150417800	Enhancers	NHEK	skin
6	chr3:150417000-150418000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:150417200-150417600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:150417200-150417800	Enhancers	A549	lung
9	chr3:150417200-150417800	Enhancers	Hela-S3	cervix
10	chr3:150417200-150417800	Enhancers	K562	blood
11	chr3:150417400-150420800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:150417400-150420800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:150417400-150420800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:150417400-150420800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:150417400-150421000	Weak transcription	HUVEC	blood vessel
16	chr3:150417400-150421000	Weak transcription	NHDF-Ad	bronchial
17	chr3:150417400-150421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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