Variant report

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150502035..150504861-chr3:150505439..150508243,2	K562	blood:
2	chr3:150505371..150506271-chr3:150547846..150548717,3	MCF-7	breast:
3	chr3:150478852..150484273-chr3:150500404..150509077,14	MCF-7	breast:
4	chr3:150438461..150439057-chr3:150505307..150506184,2	MCF-7	breast:
5	chr3:150438820..150439748-chr3:150505309..150505997,3	MCF-7	breast:
6	chr3:150504367..150507442-chr3:150579602..150583163,3	MCF-7	breast:
7	chr3:150505282..150506183-chr3:150582828..150583680,5	MCF-7	breast:
8	chr3:149945472..149946174-chr3:150505251..150506027,2	K562	blood:
9	chr3:150505248..150506241-chr3:150582658..150583739,6	K562	blood:
10	chr3:150478887..150482586-chr3:150504376..150507255,4	K562	blood:
11	chr3:150505249..150506046-chr3:150558739..150559240,2	MCF-7	breast:
12	chr3:150505508..150506047-chr3:150546775..150547309,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10513378	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16862828	1.00[AMR][1000 genomes]
rs7622742	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150501800-150506000	Enhancers	NHEK	skin
2	chr3:150503200-150505800	Enhancers	Placenta	Placenta
3	chr3:150503200-150505800	Weak transcription	Osteobl	bone
4	chr3:150504000-150506000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:150504200-150505800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:150504600-150505800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:150504600-150505800	Enhancers	Stomach Mucosa	stomach
8	chr3:150504600-150506000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:150504600-150506200	Enhancers	K562	blood
10	chr3:150504800-150506000	Enhancers	GM12878-XiMat	blood
11	chr3:150505400-150506000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:150505400-150506000	Enhancers	Brain Anterior Caudate	brain
13	chr3:150505400-150506000	Enhancers	Brain Cingulate Gyrus	brain
14	chr3:150505400-150506000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr3:150505400-150506000	Enhancers	Brain Substantia Nigra	brain
16	chr3:150505400-150506000	Enhancers	Fetal Brain Male	brain
17	chr3:150505400-150506200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:150505600-150506000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:150505600-150506000	Enhancers	Brain Hippocampus Middle	brain
20	chr3:150505600-150506000	Enhancers	NH-A	brain
21	chr3:150505600-150506400	Enhancers	Brain Germinal Matrix	brain

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