Variant report

Variant	rs6780910
Chromosome Location	chr3:112618153-112618154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11916415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11920028	0.84[AFR][1000 genomes]
rs56710227	0.84[AFR][1000 genomes]
rs6762681	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6769227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6802623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7612396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112615400-112618400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:112616200-112618400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:112616200-112622200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:112617000-112618200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:112617400-112618200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:112618000-112620000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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