Variant report

Variant	rs6781142
Chromosome Location	chr3:146524417-146524418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146523515..146525331-chr3:147109923..147112497,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174963	Chromatin interaction
ENSG00000152977	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10049114	0.80[AMR][1000 genomes]
rs10049183	0.80[AMR][1000 genomes]
rs11705960	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1367948	0.80[AMR][1000 genomes]
rs17701818	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1991715	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28493260	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28624889	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3843364	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4681336	0.83[EUR][1000 genomes]
rs56887948	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58890956	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62272988	0.83[EUR][1000 genomes]
rs6762735	0.83[EUR][1000 genomes]
rs6808136	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7619766	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9289731	0.84[EUR][1000 genomes]
rs9289732	0.82[EUR][1000 genomes]
rs981484	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9828677	0.83[ASN][1000 genomes]
rs9831862	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9840734	0.80[EUR][1000 genomes]
rs9841625	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9841883	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9845940	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9856265	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9861781	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9862944	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv591961	chr3:146394094-146725217	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1007875	chr3:146401461-146776618	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877624	chr3:146414837-146536741	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998040	chr3:146416916-146729962	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv536760	chr3:146416916-146729962	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1001931	chr3:146419061-146745361	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1005776	chr3:146511378-146599221	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv460881	chr3:146512753-146569037	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv591962	chr3:146512753-146569037	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146519600-146532800	Weak transcription	NHLF	lung
2	chr3:146522000-146527400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:146522400-146531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:146523000-146531000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:146523000-146531000	Weak transcription	NHDF-Ad	bronchial

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