Variant report

Variant	rs6781211
Chromosome Location	chr3:112505650-112505651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11916827	0.82[EUR][1000 genomes]
rs58514942	0.88[ASN][1000 genomes]
rs59890654	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv432477	chr3:112390310-112603310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv877343	chr3:112470586-112597706	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6781211	LCE1E	trans	lymphoblastoid	seeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112495200-112512600	Weak transcription	Spleen	Spleen
2	chr3:112504200-112505800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:112504200-112505800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:112504200-112505800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:112504200-112506000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:112504200-112506000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:112504400-112506000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:112504400-112506400	Enhancers	K562	blood
9	chr3:112504600-112505800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:112504600-112505800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:112504600-112505800	Enhancers	HSMM	muscle
12	chr3:112504600-112505800	Enhancers	HUVEC	blood vessel
13	chr3:112504600-112506000	Enhancers	HSMMtube	muscle
14	chr3:112504800-112505800	Enhancers	Osteobl	bone
15	chr3:112505000-112505800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:112505200-112505800	Enhancers	NHDF-Ad	bronchial
17	chr3:112505200-112512800	Weak transcription	Ovary	ovary
18	chr3:112505400-112508400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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