Variant report

Variant	rs678142
Chromosome Location	chr4:103160111-103160112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs149268	0.81[AMR][1000 genomes]
rs151370	0.81[AMR][1000 genomes]
rs34376460	0.82[AMR][1000 genomes]
rs34922141	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35301460	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35610681	0.82[AMR][1000 genomes]
rs35700174	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs373091	0.81[AMR][1000 genomes]
rs384085	0.85[AMR][1000 genomes]
rs384460	0.86[AMR][1000 genomes]
rs387839	0.81[AMR][1000 genomes]
rs406954	0.85[AMR][1000 genomes]
rs412428	0.83[AMR][1000 genomes]
rs413462	0.83[AMR][1000 genomes]
rs418348	0.83[AMR][1000 genomes]
rs431984	0.83[AMR][1000 genomes]
rs432186	0.83[AMR][1000 genomes]
rs438803	0.81[AMR][1000 genomes]
rs440507	0.83[AMR][1000 genomes]
rs448181	0.81[AMR][1000 genomes]
rs451078	0.85[AMR][1000 genomes]
rs4525979	0.81[AMR][1000 genomes]
rs455610	0.83[AMR][1000 genomes]
rs455741	0.85[AMR][1000 genomes]
rs456349	0.85[AMR][1000 genomes]
rs456521	0.85[AMR][1000 genomes]
rs456985	0.85[AMR][1000 genomes]
rs457490	0.81[AMR][1000 genomes]
rs457736	0.81[AMR][1000 genomes]
rs458201	0.81[AMR][1000 genomes]
rs458943	0.83[AMR][1000 genomes]
rs459331	0.81[AMR][1000 genomes]
rs460755	0.83[AMR][1000 genomes]
rs461902	0.81[AMR][1000 genomes]
rs4621433	0.81[AMR][1000 genomes]
rs462186	0.81[AMR][1000 genomes]
rs463542	0.85[AMR][1000 genomes]
rs4640675	0.81[AMR][1000 genomes]
rs465144	0.81[AMR][1000 genomes]
rs465176	0.85[AMR][1000 genomes]
rs467204	0.85[AMR][1000 genomes]
rs595492	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs657195	0.81[AMR][1000 genomes]
rs658953	0.81[AMR][1000 genomes]
rs659837	0.81[AMR][1000 genomes]
rs660502	0.81[AMR][1000 genomes]
rs660580	0.81[AMR][1000 genomes]
rs682916	0.81[AMR][1000 genomes]
rs688499	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008680	chr4:103153709-103206555	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1011868	chr4:103158581-103206555	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103156000-103170200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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