Variant report

Variant	rs6781728
Chromosome Location	chr3:156108528-156108529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10513487	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11706548	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708859	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719801	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11926141	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926292	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12054022	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107383	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1450105	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450106	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450107	0.96[ASN][1000 genomes]
rs1450109	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1450111	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16826083	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16826108	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17238004	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17238018	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17238651	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17309427	0.88[ASN][1000 genomes]
rs1851555	0.88[ASN][1000 genomes]
rs3755629	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755630	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772245	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772249	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772250	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772252	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772253	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772254	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772255	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3772256	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3772257	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3772260	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772261	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796166	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821417	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3821419	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55642716	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441064	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6441065	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6441066	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441067	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790537	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164709	0.88[ASN][1000 genomes]
rs73164745	0.96[ASN][1000 genomes]
rs7613469	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7615568	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7619720	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7619831	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7622423	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7631581	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs938417	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs940050	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9819261	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9846546	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9850840	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9853634	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9855401	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv1806015	chr3:156095513-156114898	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156104800-156110800	Weak transcription	Aorta	Aorta
2	chr3:156106600-156109000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:156107200-156108800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:156108000-156109800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156108000-156114000	Weak transcription	NHDF-Ad	bronchial
6	chr3:156108200-156109200	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:156108200-156113800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:156108200-156117000	Weak transcription	HSMMtube	muscle

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