Variant report

Variant	rs67821007
Chromosome Location	chrX:75647944-75647945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:75647912-75648401	Gliobla	brain:	n/a	n/a
2	JUN	chrX:75647828-75648010	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chrX:75647830-75648435	ProgFib	skin:	n/a	n/a
4	POLR2A	chrX:75647919-75648270	HCT-116	colon:	n/a	n/a
5	POLR2A	chrX:75647862-75648516	H1-neurons	neurons:	n/a	n/a
6	POLR2A	chrX:75647901-75648294	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chrX:75647704-75648496	HepG2	liver:	n/a	n/a
8	POLR2A	chrX:75647918-75648297	MCF10A-Er-Src	breast:	n/a	n/a
9	MAX	chrX:75647929-75648530	A549	lung:	n/a	n/a
10	POLR2A	chrX:75647944-75648267	SK-N-SH	brain:	n/a	n/a
11	REST	chrX:75647819-75648899	H1-neurons	neurons:	n/a	n/a
12	POLR2A	chrX:75647888-75648548	H1-neurons	neurons:	n/a	n/a
13	POLR2A	chrX:75647932-75648328	A549	lung:	n/a	n/a
14	MAZ	chrX:75647921-75648315	GM12878	blood:	n/a	n/a
15	MAX	chrX:75647883-75648619	A549	lung:	n/a	n/a
16	MAZ	chrX:75647897-75648372	IMR90	lung:	n/a	n/a
17	MAZ	chrX:75647940-75648287	HepG2	liver:	n/a	n/a
18	POLR2A	chrX:75647918-75648290	HCT-116	colon:	n/a	n/a
19	RUNX3	chrX:75647861-75648209	GM12878	blood:	n/a	n/a
20	POLR2A	chrX:75647943-75648387	A549	lung:	n/a	n/a
21	E2F4	chrX:75647917-75648416	MCF10A-Er-Src	breast:	n/a	chrX:75648057-75648066

Variant related genes	Relation type
MAGEE1	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830377	chrX:75525310-76337197	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv498037	chrX:75586665-76291236	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75646800-75649800	Active TSS	Brain Anterior Caudate	brain
2	chrX:75647200-75649000	Active TSS	Brain Hippocampus Middle	brain
3	chrX:75647200-75649400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chrX:75647200-75649400	Active TSS	Stomach Smooth Muscle	stomach
5	chrX:75647400-75648000	Enhancers	Primary B cells from peripheral blood	blood
6	chrX:75647400-75648000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chrX:75647400-75648000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chrX:75647400-75648000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chrX:75647400-75650000	Active TSS	Brain Angular Gyrus	brain
10	chrX:75647400-75650600	Active TSS	Brain Cingulate Gyrus	brain
11	chrX:75647600-75648000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chrX:75647600-75648000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chrX:75647600-75648000	Enhancers	Primary T cells fromperipheralblood	blood
14	chrX:75647600-75648000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chrX:75647600-75648000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chrX:75647600-75648000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chrX:75647600-75648000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chrX:75647600-75648000	Enhancers	GM12878-XiMat	blood
19	chrX:75647600-75648000	Enhancers	Osteobl	bone
20	chrX:75647600-75648600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
21	chrX:75647600-75648600	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chrX:75647600-75649000	Active TSS	Fetal Kidney	kidney
23	chrX:75647600-75649200	Active TSS	Brain Substantia Nigra	brain
24	chrX:75647600-75649200	Active TSS	Right Atrium	heart
25	chrX:75647600-75649200	Active TSS	A549	lung
26	chrX:75647600-75649400	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chrX:75647800-75648000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chrX:75647800-75648000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chrX:75647800-75648000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chrX:75647800-75648000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chrX:75647800-75648000	Active TSS	Fetal Brain Female	brain
32	chrX:75647800-75648000	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chrX:75647800-75648000	Enhancers	Placenta	Placenta
34	chrX:75647800-75648000	Flanking Active TSS	Dnd41	blood
35	chrX:75647800-75648200	Active TSS	Brain Germinal Matrix	brain
36	chrX:75647800-75648400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chrX:75647800-75648400	Active TSS	Adipose Nuclei	Adipose
38	chrX:75647800-75648400	Active TSS	Fetal Brain Male	brain
39	chrX:75647800-75648600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chrX:75647800-75648800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chrX:75647800-75648800	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chrX:75647800-75648800	Active TSS	HSMMtube	muscle
43	chrX:75647800-75649200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chrX:75647800-75649200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chrX:75647800-75649200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chrX:75647800-75649200	Active TSS	Aorta	Aorta
47	chrX:75647800-75649200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chrX:75647800-75649200	Active TSS	Psoas Muscle	Psoas
49	chrX:75647800-75649200	Active TSS	Rectal Mucosa Donor 29	rectum
50	chrX:75647800-75649200	Active TSS	NHEK	skin

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