Variant report

Variant	rs67824746
Chromosome Location	chr8:86363591-86363592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:86363517..86364456-chr8:87100535..87101484,3	K562	blood:
2	chr8:86363458..86364443-chr8:86375139..86376055,5	MCF-7	breast:
3	chr8:86363515..86364382-chr8:86999196..87000344,6	MCF-7	breast:
4	chr8:86363504..86364383-chr8:86986429..86987168,3	MCF-7	breast:
5	chr8:86363334..86364626-chr8:87044525..87046442,21	MCF-7	breast:
6	chr8:86362726..86365485-chr8:86365567..86367420,2	K562	blood:
7	chr8:86363241..86365174-chr8:86985333..86987257,15	MCF-7	breast:
8	chr8:86362621..86364573-chr8:86984978..86986328,33	MCF-7	breast:
9	chr8:86363526..86364138-chr8:87045071..87045735,2	MCF-7	breast:
10	chr8:86363443..86364082-chr8:87045149..87046001,2	K562	blood:
11	chr8:86363550..86364394-chr8:86999009..87000158,4	MCF-7	breast:
12	chr8:86361201..86364121-chr8:86985140..86987760,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000147614	Chromatin interaction
ENSG00000253549	Chromatin interaction
ENSG00000147613	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10088136	0.88[ASN][1000 genomes]
rs10095352	0.83[ASN][1000 genomes]
rs10111039	0.80[ASN][1000 genomes]
rs10504812	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504813	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10907474	0.99[ASN][1000 genomes]
rs11780285	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13255540	0.84[ASN][1000 genomes]
rs1389245	0.85[ASN][1000 genomes]
rs1389247	0.85[ASN][1000 genomes]
rs1472360	0.82[ASN][1000 genomes]
rs1496526	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1845253	0.94[ASN][1000 genomes]
rs2055077	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2072696	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2307075	0.80[ASN][1000 genomes]
rs2403105	0.84[ASN][1000 genomes]
rs2453868	0.81[ASN][1000 genomes]
rs2548281	0.82[ASN][1000 genomes]
rs2645047	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2645049	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2645053	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3087782	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758076	0.82[ASN][1000 genomes]
rs3758077	0.83[ASN][1000 genomes]
rs3758078	0.98[ASN][1000 genomes]
rs4566	0.81[ASN][1000 genomes]
rs55641432	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55929157	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58958691	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66498753	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6988475	0.80[ASN][1000 genomes]
rs7016369	0.99[ASN][1000 genomes]
rs703	0.91[ASN][1000 genomes]
rs713488	0.85[ASN][1000 genomes]
rs713489	0.85[ASN][1000 genomes]
rs7386162	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9286249	0.80[ASN][1000 genomes]
rs931505	0.84[ASN][1000 genomes]
rs9329911	0.87[ASN][1000 genomes]
rs955007	0.83[ASN][1000 genomes]
rs9969643	0.84[ASN][1000 genomes]
rs999466	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022463	chr8:86257031-86547831	Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv831377	chr8:86263107-86444141	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1028148	chr8:86310570-86553130	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2761206	chr8:86310582-86468868	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86351200-86364800	Weak transcription	Liver	Liver
2	chr8:86351200-86367200	Weak transcription	Left Ventricle	heart
3	chr8:86351200-86374000	Weak transcription	Fetal Intestine Small	intestine
4	chr8:86351600-86365200	Weak transcription	Brain Anterior Caudate	brain
5	chr8:86351600-86368200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:86354400-86375400	Weak transcription	Psoas Muscle	Psoas
7	chr8:86355200-86365200	Weak transcription	Stomach Mucosa	stomach
8	chr8:86358400-86375600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:86358800-86365000	Weak transcription	Fetal Lung	lung
10	chr8:86360000-86363600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:86360400-86366000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:86360600-86364400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:86363400-86363600	Enhancers	Brain Hippocampus Middle	brain

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