Variant report

Variant	rs67828350
Chromosome Location	chr11:15362697-15362698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11023518	0.94[EUR][1000 genomes]
rs11023523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11023537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023542	0.99[EUR][1000 genomes]
rs11023543	0.99[EUR][1000 genomes]
rs11023547	0.99[EUR][1000 genomes]
rs11023555	0.87[EUR][1000 genomes]
rs11023568	0.90[EUR][1000 genomes]
rs12363177	0.99[EUR][1000 genomes]
rs12577240	0.99[EUR][1000 genomes]
rs12800836	0.99[EUR][1000 genomes]
rs35824480	0.97[EUR][1000 genomes]
rs4604863	0.99[EUR][1000 genomes]
rs67068849	0.99[EUR][1000 genomes]
rs67732927	0.99[EUR][1000 genomes]
rs72861982	0.99[EUR][1000 genomes]
rs72861992	0.94[EUR][1000 genomes]
rs9645645	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1044103	chr11:15345545-15390081	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15358800-15363000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:15362000-15364000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:15362200-15364200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:15362400-15364200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:15362400-15364200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:15362600-15363000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:15362600-15363200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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