Variant report

Variant	rs6783590
Chromosome Location	chr3:111191808-111191809
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12330603	1.00[AMR][1000 genomes]
rs1391365	1.00[AMR][1000 genomes]
rs2173319	1.00[AMR][1000 genomes]
rs4459900	1.00[AMR][1000 genomes]
rs4682276	1.00[AMR][1000 genomes]
rs4682282	1.00[AMR][1000 genomes]
rs6437988	1.00[AMR][1000 genomes]
rs6779390	1.00[AMR][1000 genomes]
rs9288925	1.00[AMR][1000 genomes]
rs9883698	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111191000-111193000	Enhancers	Placenta	Placenta
2	chr3:111191200-111192200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:111191200-111192800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:111191400-111192000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:111191400-111192600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:111191600-111192200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:111191600-111192800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr3:111191800-111192600	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links