Variant report

Variant	rs67838345
Chromosome Location	chr5:116532733-116532734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11955025	1.00[ASN][1000 genomes]
rs11960206	1.00[ASN][1000 genomes]
rs12153048	0.85[EUR][1000 genomes]
rs17141256	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1984982	1.00[ASN][1000 genomes]
rs56941413	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57262132	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs59859286	1.00[ASN][1000 genomes]
rs61304407	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61561636	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67212247	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs68065103	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6869373	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72810588	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7446234	1.00[ASN][1000 genomes]
rs7711251	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116532000-116536400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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