Variant report

Variant	rs6784374
Chromosome Location	chr3:109980445-109980446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1159138	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1461758	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1461759	0.88[EUR][1000 genomes]
rs1461762	0.88[EUR][1000 genomes]
rs1870803	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2399303	0.88[EUR][1000 genomes]
rs2399304	0.86[EUR][1000 genomes]
rs2399305	0.88[EUR][1000 genomes]
rs2712995	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2895368	0.88[EUR][1000 genomes]
rs4682570	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6790010	0.88[EUR][1000 genomes]
rs9840831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862390	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109978800-109983800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:109980000-109982000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:109980400-109981800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:109980400-109981800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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