Variant report

Variant	rs6784553
Chromosome Location	chr3:141168943-141168944
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141030674..141032798-chr3:141168575..141172474,3	K562	blood:
2	chr3:141084098..141087550-chr3:141168152..141171297,3	MCF-7	breast:
3	chr3:141164105..141166380-chr3:141168817..141173824,4	K562	blood:
4	chr3:141160372..141162712-chr3:141168318..141171011,2	MCF-7	breast:
5	chr3:141158978..141161991-chr3:141166297..141169047,4	K562	blood:
6	chr3:141165442..141167076-chr3:141168884..141170574,2	K562	blood:

Variant related genes	Relation type
ENSG00000249417	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11918764	0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56344536	0.86[AMR][1000 genomes]
rs6777525	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6805333	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638775	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
3	chr3:141160400-141169600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:141161200-141169000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:141162400-141170800	Weak transcription	Stomach Mucosa	stomach
7	chr3:141162600-141171200	Weak transcription	Thymus	Thymus
8	chr3:141163000-141174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:141163200-141169200	Weak transcription	K562	blood
10	chr3:141163600-141171200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:141163600-141171200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:141164000-141174000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:141164200-141170800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:141164200-141173600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:141164200-141176400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:141164400-141170600	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:141164400-141171000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:141164400-141171200	Weak transcription	Primary T cells from cord blood	blood
19	chr3:141164400-141173200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:141164400-141173600	Weak transcription	Colonic Mucosa	Colon
21	chr3:141164600-141169800	Weak transcription	Right Ventricle	heart
22	chr3:141164600-141173000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:141164600-141173600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:141164800-141170600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:141164800-141170600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:141164800-141170600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr3:141164800-141170600	Weak transcription	Fetal Intestine Small	intestine
28	chr3:141164800-141170800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:141164800-141170800	Weak transcription	Fetal Kidney	kidney
30	chr3:141164800-141171200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr3:141164800-141173000	Weak transcription	Gastric	stomach
32	chr3:141164800-141173400	Weak transcription	Brain Substantia Nigra	brain
33	chr3:141164800-141174400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr3:141165000-141173800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:141165800-141170600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr3:141166000-141169600	Weak transcription	Fetal Stomach	stomach
37	chr3:141166000-141169800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:141166000-141170600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:141166200-141169600	Weak transcription	Left Ventricle	heart
40	chr3:141166400-141170800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:141166400-141173600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:141166600-141169000	Genic enhancers	Osteobl	bone
43	chr3:141166600-141169400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:141166600-141170600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr3:141166600-141170600	Weak transcription	HepG2	liver
46	chr3:141166600-141170800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:141166600-141170800	Weak transcription	Brain Angular Gyrus	brain
48	chr3:141166600-141170800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:141166600-141170800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr3:141166600-141170800	Weak transcription	Small Intestine	intestine

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