Variant report

Variant	rs6785108
Chromosome Location	chr3:194957239-194957240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:194943164..194945109-chr3:194956482..194959428,2	K562	blood:
2	chr3:194942154..194945109-chr3:194956482..194959428,3	K562	blood:
3	chr3:194956917..194959266-chr3:194967812..194970352,2	K562	blood:
4	chr3:194956680..194958904-chr3:194960408..194963314,3	K562	blood:

Variant related genes	Relation type
ENSG00000173950	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10933702	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10933703	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917438	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918143	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11919965	0.90[EUR][1000 genomes]
rs11921174	0.81[EUR][1000 genomes]
rs11928199	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12485800	0.90[EUR][1000 genomes]
rs12486168	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486220	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486636	0.81[EUR][1000 genomes]
rs12486835	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488616	0.85[EUR][1000 genomes]
rs12491426	0.85[EUR][1000 genomes]
rs12491902	0.85[EUR][1000 genomes]
rs12492289	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12492644	0.90[EUR][1000 genomes]
rs12493888	0.85[EUR][1000 genomes]
rs12494306	0.81[EUR][1000 genomes]
rs12495659	0.85[EUR][1000 genomes]
rs12496628	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497444	0.81[EUR][1000 genomes]
rs12497906	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12498063	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35899174	1.00[EUR][1000 genomes]
rs56281422	0.81[EUR][1000 genomes]
rs56835677	0.85[EUR][1000 genomes]
rs58113840	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59579668	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60677730	0.81[EUR][1000 genomes]
rs61022222	0.85[EUR][1000 genomes]
rs6437466	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66510151	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67388686	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67484513	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777904	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6790425	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6804467	0.90[EUR][1000 genomes]
rs72499624	0.85[EUR][1000 genomes]
rs73069019	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7642127	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999331	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007697	chr3:194554814-195009930	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536873	chr3:194554814-195009930	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1009796	chr3:194737333-195124248	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv461126	chr3:194817484-194961888	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv592981	chr3:194817484-194961888	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
7	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
8	nsv533904	chr3:194868329-195438728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
9	nsv1009120	chr3:194874494-194974672	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1010168	chr3:194874494-195135790	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv536877	chr3:194874494-195135790	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv997956	chr3:194879534-195087539	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv536878	chr3:194879534-195087539	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	esv1832781	chr3:194902818-195528226	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
15	nsv432508	chr3:194916131-195478861	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
16	nsv432510	chr3:194935314-195478861	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
17	nsv984539	chr3:194945800-194984579	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:194931600-194958800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:194940600-194959000	Weak transcription	Right Ventricle	heart
3	chr3:194944600-194959000	Weak transcription	Ovary	ovary
4	chr3:194945200-194958800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:194945200-194959200	Weak transcription	NHLF	lung
6	chr3:194945400-194958800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:194945400-194959200	Weak transcription	Osteobl	bone
8	chr3:194945400-194971600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:194945600-194957800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:194945600-194959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:194946000-194957600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:194946000-194958800	Weak transcription	Aorta	Aorta
13	chr3:194946000-194958800	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:194946000-194959000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:194946000-194971400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:194946400-194957800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:194947000-194959000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:194947600-194957400	Weak transcription	Dnd41	blood
19	chr3:194947600-194957600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:194947600-194957600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:194947600-194957800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:194947600-194962200	Weak transcription	Hela-S3	cervix
23	chr3:194947800-194957400	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:194947800-194958800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:194947800-194959000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:194947800-194959400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:194947800-194961200	Weak transcription	Gastric	stomach
28	chr3:194948000-194957400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:194948000-194958800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:194948000-194959000	Weak transcription	Lung	lung
31	chr3:194948200-194959000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:194948200-194959200	Weak transcription	HUVEC	blood vessel
33	chr3:194948400-194957600	Weak transcription	Primary T cells from cord blood	blood
34	chr3:194948400-194959400	Weak transcription	Fetal Brain Female	brain
35	chr3:194948600-194958800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:194949000-194959000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr3:194951200-194958800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:194954600-194957600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:194955000-194973200	Weak transcription	NH-A	brain
40	chr3:194955200-194958800	Weak transcription	Fetal Brain Male	brain
41	chr3:194955400-194959200	Weak transcription	Fetal Lung	lung
42	chr3:194955600-194957400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:194955600-194958800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:194955800-194957400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr3:194956200-194957400	Weak transcription	Adipose Nuclei	Adipose
46	chr3:194956200-194957600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr3:194956400-194958400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:194956400-194959000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:194956400-194966800	Weak transcription	HSMM	muscle
50	chr3:194956600-194957400	Weak transcription	Rectal Mucosa Donor 29	rectum

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